PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_196.g922.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 1074aa    MW: 119751 Da    PI: 5.3409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_196.g922.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-1110061029427
                                            ---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                                             +C+f+ +tGtCk+G+ C+F H+p
  model.Picochlorum_contig_196.g922.t1 1006 TPCDFYIKTGTCKFGADCRFDHPP 1029
                                            59********************96 PP

2zf-CCCH27.55.5e-0910441069126
                                            --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                                            ++++ C++f rt tCkyG+ Ck+ H+
  model.Picochlorum_contig_196.g922.t1 1044 PGEPKCNHFERTMTCKYGAACKYDHS 1069
                                            57899********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509982.55E-989163IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.140.10.103.2E-793319IPR027295Quinoprotein alcohol dehydrogenase-like domain
PfamPF010115.8E-595123IPR002372Pyrrolo-quinoline quinone repeat
SuperFamilySSF509982.55E-9192332IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:3.30.200.202.5E-17498639No hitNo description
PROSITE profilePS5001135.736523789IPR000719Protein kinase domain
SMARTSM002203.0E-37523789IPR000719Protein kinase domain
SuperFamilySSF561121.21E-52526790IPR011009Protein kinase-like domain
PfamPF000691.7E-38526787IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.105.6E-36640820No hitNo description
PROSITE patternPS001080649661IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139234.28792925IPR010513KEN domain
PfamPF064798.0E-38795923IPR010513KEN domain
CDDcd104221.31E-50795923No hitNo description
SMARTSM005801.5E-15856910IPR018997PUB domain
SMARTSM003563.0E-510021029IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-510051030IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-810061029IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-510071029IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.40810071030IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.39410431071IPR000571Zinc finger, CCCH-type
SMARTSM003560.004910431070IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-610451069IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000394Biological ProcessRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0034263Biological Processautophagy in response to ER overload
GO:0046777Biological Processprotein autophosphorylation
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MGARGRSFSY FSSHTFLVWW LLLFLLNSRH VFVRSSVDDE HTMPIRNIDE LMDVLGDEQE  60
IDVDPRAALQ SDVLMEALGK HQVPQVEHHL LVSLADGHIV ALDEDTGRRV WSIDTGSPLV  120
ASSTHAERRG GDDVHSGEYE GIFPSTDGSL YTYSLDEEGS PHVQKLPMTV KDLVDASPSP  180
TPEGAMMLGS QQTVVFIIDV QRGIVLKTIK GDDTDVFMYL RGHDGTTPVD EDFFQDGVEV  240
KTIVISRKDF IIRSIHPSFG EQWNVTWSQL DKMSMVELHG HGAEVDRDDM KLVLAPDYSL  300
KRFDGETGAE MWSVSFPIPP TVAYPSSGKA IDLLDATKKM LNMVVDRKAS MTALVEQGHL  360
LEVSETLVVG EMEGKLFGLR APYFKKSDRA RVTEDSAIVG GEEEEEHALV PAGKTVGRVC  420
KDKHDVCRIP VGFYPLVENA SETRLLFLPK CSADDVEDCE DDSDVVVPSR MRRAVVVGST  480
VTTLLVTVFL FKKRRGVEEP SSSISQQKAV ELPNGNTKVG RLEVSKEVLG YGSGGTAVYE  540
GILDGRKVAV KRMLKQFVDL AKQEIEALID SDEHPNVVRC FALEEDGEFI YLALERCDMS  600
LADALETSKM KNMRFRKVDA DGSIVNTPLA YQVARDIVEG VNAVHSRGIV HRDLKPHNVL  660
LNSSGRAKLS DMGLSKKLVD NQASFETLGA GGSPGWQAPE QLTVRRGGTA RLTASVDVFS  720
SGLLVHYCLT GGKHPYGESY DRDNAILKDE KDLSAIQGIP CAENLISAML SMDAANRPTS  780
EEILQHPMWW TSHDRLSFLS DFSDRVEVEN RAEDESAFIA LESLSPWAIG HPSGWLDALD  840
QLLVDNLVKY RKYDSQSLRD LLRVIRNKYS HYRELPKDLQ KVLGDIPDGF LSYFERRFPK  900
LVTTCFSFAL KWYSGDAIFE KYFDSAKAKG LLDTCAPPQM RDPEVREAAL EEARARIEAK  960
KKEMRTLLQD HAQQMVNNGT PNHTGRTPEK PQYQPSPLLP RRPWMTPCDF YIKTGTCKFG  1020
ADCRFDHPPE HQVPLNEFGL PIRPGEPKCN HFERTMTCKY GAACKYDHSL STT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_C3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_D3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_E3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_F3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_G3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_H3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_I3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_J3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_K3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_L3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_M3e-954929254448Serine/threonine-protein kinase/endoribonucle
3fbv_N3e-954929254448Serine/threonine-protein kinase/endoribonucle
3sdm_A3e-954929254448Serine/threonine-protein kinase/endoribonucle
3sdm_B3e-954929254448Serine/threonine-protein kinase/endoribonucle
3sdm_C3e-954929254448Serine/threonine-protein kinase/endoribonucle
3sdm_D3e-954929254448Serine/threonine-protein kinase/endoribonucle
3sdm_E3e-954929254448Serine/threonine-protein kinase/endoribonucle
3sdm_F3e-954929254448Serine/threonine-protein kinase/endoribonucle
3sdm_G3e-954929254448Serine/threonine-protein kinase/endoribonucle
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.36e-19zinc finger nuclease 3